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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173137568_173149042_F

Intron Information:

Intron Rank:
132752
Intron Class:
major
Intron Phase:
Intron Coordinates:
173137568 - 173149042
Intron Length:
11475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGA|GTAAGGACT
5'SS Class:
major
3'SS Sequence:
TCTTCACCCTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTCAC
U12 Branch Point Sequence:
CCTTCTTCACCC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.9
0.52
1.1
69.8
40.7
Major BPS
77.5
0.68
1
79.6
33
Major PPT
73.1
0.52
0.8
70.9
29
Minor 5ss
36.2
-1.6
3.2
46.7
42.5
Minor BPS
50.1
-0
1.9
61.68
44.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021359
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017759
173137258 - 173149236
11979