Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173181353_173183332_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

173181353 - 173183332

Intron Length:

1980

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTAATTCTT

5'SS Class:

major

3'SS Sequence:

TCTCCTTTCACAG|A

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TAGTGAT

U12 Branch Point Sequence:

TCTCCTTTCACA

Flanking Amino Acid:

IENQECKSCMSIDLSNKEHG

Intron Amino Acid Position:

455

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

79.1

0.69

76.4

38.8

Major BPS

73.5

0.58

1.2

63.4

44.3

Major PPT

83.8

0.76

0.7

78.9

26.6

Minor 5ss

40.4

-1.1

3.1

56.3

42.2

Minor BPS

0.37

1.8

72.26

40.2

Associated Gene:

Gene:

DEUP1

Ensembl Gene ID:

ENSAPLG00000014531

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015140

173169457 - 173211799

42343

ENSAPLT00000034678

173169457 - 173210698

41242

ENSAPLT00000026362

173169457 - 173210698

41242