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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173183420_173184397_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173183420 - 173184397
Intron Length:
978

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGCAAG
5'SS Class:
strong_major
3'SS Sequence:
TATCTTTTCCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGTCTAAGAACT
Flanking Amino Acid:
IKDKLLAKQQVLDFNYKVVK
Intron Amino Acid Position:
426

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
70.6
41.3
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
79.6
0.67
0.8
73.3
36.8
Minor 5ss
44.8
-0.6
2.6
56.4
48
Minor BPS
46.2
-0.2
1.9
69.73
40.1

Associated Gene:

Gene:
DEUP1
Ensembl Gene ID:
ENSAPLG00000014531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046260
173181822 - 173211799
29978
ENSAPLT00000034678
173169457 - 173210698
41242
ENSAPLT00000026362
173169457 - 173210698
41242
ENSAPLT00000015140
173169457 - 173211799
42343