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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173184596_173186171_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173184596 - 173186171
Intron Length:
1576

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACGTCAC
5'SS Class:
strong_major
3'SS Sequence:
GTATTTGCTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAT
U12 Branch Point Sequence:
TTTTTCTTATTG
Flanking Amino Acid:
QESQQEVLSKIRNHLYREEQ
Intron Amino Acid Position:
360

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
1
72.5
39.1
Major BPS
91.4
1.03
0.7
79.9
34.9
Major PPT
75.7
0.58
1
69.1
41.7
Minor 5ss
33.4
-1.9
3.1
43.8
43.9
Minor BPS
68.9
0.45
1.6
74.56
38.3

Associated Gene:

Gene:
DEUP1
Ensembl Gene ID:
ENSAPLG00000014531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015140
173169457 - 173211799
42343
ENSAPLT00000046260
173181822 - 173211799
29978
ENSAPLT00000034678
173169457 - 173210698
41242
ENSAPLT00000026362
173169457 - 173210698
41242