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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173186278_173186934_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
173186278 - 173186934
Intron Length:
657

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTATGTGTG
5'SS Class:
major
3'SS Sequence:
TTCTAATTTAAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATT
Flanking Amino Acid:
KIREMQEIQIKHQSSSVQLT
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.6
0.65
1
71.6
38.4
Major BPS
100
1.24
0.5
100
0
Major PPT
71.5
0.48
1.1
71.3
37.5
Minor 5ss
44.1
-0.6
3.1
57.5
41.6
Minor BPS
67.5
0.63
1.7
86.64
33.8

Associated Gene:

Gene:
DEUP1
Ensembl Gene ID:
ENSAPLG00000014531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034678
173169457 - 173210698
41242
ENSAPLT00000026362
173169457 - 173210698
41242
ENSAPLT00000015140
173169457 - 173211799
42343
ENSAPLT00000046260
173181822 - 173211799
29978