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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173187072_173190933_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173187072 - 173190933
Intron Length:
3862

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGATA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
ATTTGTGTATTT
Flanking Amino Acid:
DLKMFQKQCQNMEASFSEMK
Intron Amino Acid Position:
279

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.4
0.76
1
80.6
33.4
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
89.6
0.89
0.6
89.5
19.2
Minor 5ss
35.9
-1.6
3.2
48.7
47.1
Minor BPS
44.2
-0.3
2.4
69.31
42.7

Associated Gene:

Gene:
DEUP1
Ensembl Gene ID:
ENSAPLG00000014531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026362
173169457 - 173210698
41242
ENSAPLT00000015140
173169457 - 173211799
42343
ENSAPLT00000046260
173181822 - 173211799
29978
ENSAPLT00000034678
173169457 - 173210698
41242