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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173196691_173201468_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173196691 - 173201468
Intron Length:
4778

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAAGGAAA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTCAT
U12 Branch Point Sequence:
TCTGCTTTCATT
Flanking Amino Acid:
ETQLQALKSQFSKLTHSYEK
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.4
0.74
1
77.7
32
Major BPS
87.6
0.93
0.9
89.3
26
Major PPT
83.3
0.75
0.7
81.6
29.1
Minor 5ss
33.3
-1.9
3.2
39.8
40.3
Minor BPS
56.8
0.3
1.9
74.65
43.4

Associated Gene:

Gene:
DEUP1
Ensembl Gene ID:
ENSAPLG00000014531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026362
173169457 - 173210698
41242
ENSAPLT00000015140
173169457 - 173211799
42343
ENSAPLT00000046260
173181822 - 173211799
29978
ENSAPLT00000034678
173169457 - 173210698
41242