About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173201565_173202909_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173201565 - 173202909
Intron Length:
1345

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTATTTTAA
5'SS Class:
major
3'SS Sequence:
ATTCTAACTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAC
U12 Branch Point Sequence:
CTTATTCTAACT
Flanking Amino Acid:
QSKLDQKGQEVGLLQQKLEN
Intron Amino Acid Position:
93

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.7
0.68
1
74.8
30.7
Major BPS
84.6
0.86
0.8
83.9
22.3
Major PPT
70.9
0.47
0.9
64.7
36
Minor 5ss
45.7
-0.5
2.5
58.1
46.4
Minor BPS
57.6
0.32
1.7
76.64
40.1

Associated Gene:

Gene:
DEUP1
Ensembl Gene ID:
ENSAPLG00000014531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034678
173169457 - 173210698
41242
ENSAPLT00000026362
173169457 - 173210698
41242
ENSAPLT00000015140
173169457 - 173211799
42343
ENSAPLT00000046260
173181822 - 173211799
29978