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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173203082_173210579_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
173203082 - 173210579
Intron Length:
7498

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTGAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTATTATTACTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTATTATTA
Flanking Amino Acid:
LEVFQEQALAKASPCDTQLQ
Intron Amino Acid Position:
35

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
82.1
24.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
73.4
0.53
1
68
42.3
Minor 5ss
31.3
-2.1
2.7
33.5
35.5
Minor BPS
59.9
0.31
1.8
75.92
35.5

Associated Gene:

Gene:
DEUP1
Ensembl Gene ID:
ENSAPLG00000014531
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000046260
173181822 - 173211799
29978
ENSAPLT00000034678
173169457 - 173210698
41242
ENSAPLT00000026362
173169457 - 173210698
41242
ENSAPLT00000015140
173169457 - 173211799
42343