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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173235077_173235164_F

Intron Information:

Intron Rank:
139967
Intron Class:
major
Intron Phase:
Intron Coordinates:
173235077 - 173235164
Intron Length:
88

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAACTACT
5'SS Class:
strong_major
3'SS Sequence:
TAATCCTCCGTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTGAA
U12 Branch Point Sequence:
TCATGTTTAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
1.1
84.4
33.5
Major BPS
87.2
0.92
0.8
77.7
37.1
Major PPT
68.2
0.41
0.8
62.9
33.7
Minor 5ss
43.9
-0.7
2.6
61.4
42.9
Minor BPS
59.6
0.28
1.8
66.35
40.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025245
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021268
173234894 - 173242779
7886