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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173235663_173237373_F

Intron Information:

Intron Rank:
139968
Intron Class:
major
Intron Phase:
Intron Coordinates:
173235663 - 173237373
Intron Length:
1711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGATTGCT
5'SS Class:
strong_major
3'SS Sequence:
TTCATTTCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTCTAAA
U12 Branch Point Sequence:
GTACTCTAAACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
0.9
76.8
31.6
Major BPS
73
0.57
1
73.6
28.6
Major PPT
84.6
0.78
0.8
77
37.1
Minor 5ss
30
-2.3
3.2
41.8
44.7
Minor BPS
56.5
0.18
1.7
65.26
39.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025245
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021268
173234894 - 173242779
7886