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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173301881_173309091_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173301881 - 173309091
Intron Length:
7211

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TATTTTTCTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
VVFLAENVKQVHEGFLEIKS
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.8
86
23.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.5
0.89
0.7
84.5
30.1
Minor 5ss
35.6
-1.6
2.8
42.6
38.4
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
SLC36A4
Ensembl Gene ID:
ENSAPLG00000014091
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019731
173250462 - 173362370
111909
ENSAPLT00000014697
173278186 - 173362370
84185