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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173400745_173403273_R

Intron Information:

Intron Rank:
153772
Intron Class:
major
Intron Phase:
Intron Coordinates:
173400745 - 173403273
Intron Length:
2529

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
CCTGCATTCTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
CACTCCTGCATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
77.8
38.7
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72.6
0.51
0.9
68.9
36
Minor 5ss
33.5
-1.9
2.8
34.2
41.4
Minor BPS
49.1
0.01
1.9
65.53
45.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030225
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042738
173399167 - 173416441
17275