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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173403384_173404022_R

Intron Information:

Intron Rank:
153773
Intron Class:
major
Intron Phase:
Intron Coordinates:
173403384 - 173404022
Intron Length:
639

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATCATT
5'SS Class:
strong_major
3'SS Sequence:
ACTTTTTCACAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TATTTGTCACTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.9
0.78
1
83.7
34.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
65.7
0.35
1.1
65.6
39.6
Minor 5ss
45.4
-0.5
2.9
66.6
44.4
Minor BPS
44.9
-0.3
2.3
68.51
43

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030225
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042738
173399167 - 173416441
17275