Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173542272_173550456_F

Intron Information:

Intron Rank:

130947

Intron Class:

major

Intron Phase:

Intron Coordinates:

173542272 - 173550456

Intron Length:

8185

Sequence Information:

Terminal Dinucleotides:

GC-AG

5'SS Sequence:

TAA|GCAAGGCTC

5'SS Class:

strong_major

3'SS Sequence:

TAATCTTTAATAG|A

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TACTCAT

U12 Branch Point Sequence:

TAATCTTTAATA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.3

0.72

1.1

78.3

32.5

Major BPS

87.1

0.92

0.7

85.9

22.5

Major PPT

70.2

0.45

66.6

38.9

Minor 5ss

26.7

-2.7

4.3

42.1

Minor BPS

77.1

0.85

77.38

33.1

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000046241

173542153 - 173551673

9521

ENSAPLT00000045827

173542153 - 173570946

28794