Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173550647_173570290_F

Intron Information:

Intron Rank:

130948

Intron Class:

major

Intron Phase:

Intron Coordinates:

173550647 - 173570290

Intron Length:

19644

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

ATG|GTCAGTTAG

5'SS Class:

major

3'SS Sequence:

TTCTCTTCCCTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTGTAC

U12 Branch Point Sequence:

TTCTTTGTACCT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

72.8

0.54

1.3

67.6

40.2

Major BPS

61.6

0.29

1.4

63.4

Major PPT

79.3

0.66

0.7

73.3

31.6

Minor 5ss

35.1

-1.7

2.7

Minor BPS

48.9

-0

2.2

74.22

43.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000020326

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000045827

173542153 - 173570946

28794