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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173579778_173585572_R

Intron Information:

Intron Rank:
25
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173579778 - 173585572
Intron Length:
5795

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAT
5'SS Class:
strong_major
3'SS Sequence:
TTGTATCTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTGTATCTAACA
Flanking Amino Acid:
SFQSDSGDDNVSVMDQGQNY
Intron Amino Acid Position:
4352

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86
0.85
0.9
82.5
29.7
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
74.9
0.56
1
70.2
39.9
Minor 5ss
35.3
-1.7
3.1
46.4
43
Minor BPS
57.8
0.24
1.9
72.99
38.8

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039744
173578478 - 173992244
413767