About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173585687_173587217_R

Intron Information:

Intron Rank:
24
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
173585687 - 173587217
Intron Length:
1531

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTAGC
5'SS Class:
strong_major
3'SS Sequence:
GCTGTCAATGAAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TACATAT
U12 Branch Point Sequence:
TTTGCTGTCAAT
Flanking Amino Acid:
RKSTWDAGTESKGVDDAEEV
Intron Amino Acid Position:
4314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.6
0.84
0.9
79
35.3
Major BPS
66.4
0.41
1
61.3
37
Major PPT
55
0.11
1.2
54
39.7
Minor 5ss
37.8
-1.4
2.7
46.1
36
Minor BPS
44.8
-0.3
2.5
72.3
45

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039744
173578478 - 173992244
413767