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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173587874_173588575_R

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
173587874 - 173588575
Intron Length:
702

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAC|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTCTTCTTTTAAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCCCCAA
U12 Branch Point Sequence:
TGTTCCCCAAAC
Flanking Amino Acid:
CNCKNGLTGVTCEEDINECE
Intron Amino Acid Position:
4118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.1
0.73
1.2
83.2
30.8
Major BPS
50.5
0.01
1.3
60.6
37.4
Major PPT
81.6
0.71
0.9
86.7
24.6
Minor 5ss
36.4
-1.5
2.7
41.6
38.3
Minor BPS
52.5
0.06
2
70.26
40.2

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014065
173578478 - 173902833
324356
ENSAPLT00000041352
173578478 - 173947310
368833
ENSAPLT00000039744
173578478 - 173992244
413767
ENSAPLT00000030538
173578478 - 173902833
324356