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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173588730_173598461_R

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173588730 - 173598461
Intron Length:
9732

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTAAATATT
5'SS Class:
strong_major
3'SS Sequence:
CCTCATCTCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
TGTCCCTCATCT
Flanking Amino Acid:
GGTCTSVPSGGYQCNCLSQF
Intron Amino Acid Position:
4067

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.7
0.77
0.9
86
29.7
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
73.8
0.54
0.8
64.7
36.1
Minor 5ss
41.2
-1
3
56.7
42
Minor BPS
58.7
0.35
1.9
79.14
42.3

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039744
173578478 - 173992244
413767
ENSAPLT00000030538
173578478 - 173902833
324356
ENSAPLT00000014065
173578478 - 173902833
324356
ENSAPLT00000041352
173578478 - 173947310
368833