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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_17359472_17363422_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
17359472 - 17363422
Intron Length:
3951

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTAGG
5'SS Class:
major
3'SS Sequence:
TTTCCATCTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TACTAAC
U12 Branch Point Sequence:
TGTTACTAACCA
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.8
0.63
1
68.2
42.7
Major BPS
76.8
0.67
0.9
75.9
25
Major PPT
78.7
0.64
0.8
70.9
34.9
Minor 5ss
37
-1.5
2.7
44.2
38.4
Minor BPS
49.8
-0
2.1
69.03
43.1

Associated Gene:

Gene:
TAFA5
Ensembl Gene ID:
ENSAPLG00000029978
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027283
16820224 - 17363598
543375