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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173608150_173609158_R

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173608150 - 173609158
Intron Length:
1009

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGCACGTC
5'SS Class:
major
3'SS Sequence:
ATGATTATTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TCTTTTCAAAAT
Flanking Amino Acid:
CPPGKLGECSGHTSLSFAGN
Intron Amino Acid Position:
3858

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
66.8
0.4
1.1
60.1
39.3
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
74.7
0.56
1
71
43.6
Minor 5ss
33.7
-1.9
3.7
49.3
47.2
Minor BPS
46.8
-0.1
2
68.81
42.5

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014065
173578478 - 173902833
324356
ENSAPLT00000041352
173578478 - 173947310
368833
ENSAPLT00000039744
173578478 - 173992244
413767
ENSAPLT00000030538
173578478 - 173902833
324356