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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173609294_173619332_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173609294 - 173619332
Intron Length:
10039

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACC
5'SS Class:
strong_major
3'SS Sequence:
TAACTTATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
AGTATTTTAACT
Flanking Amino Acid:
FYRNVRCMCNGGLCPGSNDP
Intron Amino Acid Position:
3813

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
76.7
31.8
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
76.5
0.6
0.9
70.4
39.4
Minor 5ss
31.7
-2.1
2.6
35.1
34.5
Minor BPS
69.8
0.7
1.2
79.52
36.2

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030538
173578478 - 173902833
324356
ENSAPLT00000014065
173578478 - 173902833
324356
ENSAPLT00000041352
173578478 - 173947310
368833
ENSAPLT00000039744
173578478 - 173992244
413767