Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173620132_173622637_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

173620132 - 173622637

Intron Length:

2506

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTATGCCCT

5'SS Class:

strong_major

3'SS Sequence:

TTAATTATTTTAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTGTTTTAATT

Flanking Amino Acid:

VATEYVLCVQAKDSGKPQQV

Intron Amino Acid Position:

3547

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

80.4

0.72

42.9

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

76.8

0.6

0.9

39.4

Minor 5ss

46.6

-0.3

2.8

66.1

Minor BPS

74.3

0.84

1.2

86.64

33.8

Associated Gene:

Gene:

FAT3

Ensembl Gene ID:

ENSAPLG00000013451

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039744

173578478 - 173992244

413767

ENSAPLT00000030538

173578478 - 173902833

324356

ENSAPLT00000014065

173578478 - 173902833

324356

ENSAPLT00000041352

173578478 - 173947310

368833