Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173622836_173623385_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

173622836 - 173623385

Intron Length:

550

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTAAGTTCA

5'SS Class:

strong_major

3'SS Sequence:

TATACGCATAAAG|G

3'SS Class:

degenerate_major

U2 Branch Point Sequence:

TTTTAAT

U12 Branch Point Sequence:

TTTTCATTATAT

Flanking Amino Acid:

TPANYTAVIQENKPVGTSIL

Intron Amino Acid Position:

3481

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.1

0.85

0.9

80.5

27.6

Major BPS

99.5

1.23

0.5

98.2

4.2

Major PPT

55.1

0.12

1.2

53.1

40.6

Minor 5ss

42.2

-0.9

2.7

50.9

39.6

Minor BPS

62.9

0.48

86.88

38.3

Associated Gene:

Gene:

FAT3

Ensembl Gene ID:

ENSAPLG00000013451

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000039744

173578478 - 173992244

413767

ENSAPLT00000030538

173578478 - 173902833

324356

ENSAPLT00000014065

173578478 - 173902833

324356

ENSAPLT00000041352

173578478 - 173947310

368833