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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173623530_173626170_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173623530 - 173626170
Intron Length:
2641

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAGACAC
5'SS Class:
strong_major
3'SS Sequence:
CACCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
ATATTTTCACCT
Flanking Amino Acid:
KVKKKLDRERISGYSLVIQA
Intron Amino Acid Position:
3433

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
66
40.1
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
81.3
0.7
0.8
75.8
32.3
Minor 5ss
31.8
-2.1
3.1
34.5
41.3
Minor BPS
50.4
0.09
1.8
70.82
40.4

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039744
173578478 - 173992244
413767
ENSAPLT00000030538
173578478 - 173902833
324356
ENSAPLT00000014065
173578478 - 173902833
324356
ENSAPLT00000041352
173578478 - 173947310
368833