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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173630597_173641463_R

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173630597 - 173641463
Intron Length:
10867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTAAGAGAG
5'SS Class:
strong_major
3'SS Sequence:
GCTTCTCTTTTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
ATTTTCACATCT
Flanking Amino Acid:
TRVQATDPDVGVNRKVTYSL
Intron Amino Acid Position:
3185

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.6
0.72
1
66.4
39.5
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
79.7
0.67
0.8
77.4
31.4
Minor 5ss
30.3
-2.3
3.3
39.1
46.1
Minor BPS
48.8
-0
2
75.5
40.9

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030538
173578478 - 173902833
324356
ENSAPLT00000014065
173578478 - 173902833
324356
ENSAPLT00000041352
173578478 - 173947310
368833
ENSAPLT00000039744
173578478 - 173992244
413767