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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173658394_173659979_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173658394 - 173659979
Intron Length:
1586

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTAAGAAAG
5'SS Class:
strong_major
3'SS Sequence:
ACTTGTCCCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GTATCAT
U12 Branch Point Sequence:
GTATCATGCACT
Flanking Amino Acid:
AQDKHILNVMVRDQEFPYRR
Intron Amino Acid Position:
1562

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.6
0.79
0.9
73.4
37.3
Major BPS
70.5
0.51
1.3
74
41.2
Major PPT
68.4
0.41
0.8
62
34.3
Minor 5ss
33
-1.9
2.9
37.5
41.1
Minor BPS
48.2
-0
2.2
72.32
43.6

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014065
173578478 - 173902833
324356
ENSAPLT00000041352
173578478 - 173947310
368833
ENSAPLT00000039744
173578478 - 173992244
413767
ENSAPLT00000030538
173578478 - 173902833
324356