About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173682693_173707969_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
173682693 - 173707969
Intron Length:
25277

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGATTA
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GAATAAT
U12 Branch Point Sequence:
CCATTCAGAATA
Flanking Amino Acid:
REQQAEHFLEVTVSDGGTSP
Intron Amino Acid Position:
1225

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.3
1.02
0.7
86.9
22.8
Major BPS
62.3
0.31
1.3
64.3
39.7
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
41.5
-0.9
3.1
56
48.2
Minor BPS
46.6
-0.2
1.7
53.29
39.3

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039744
173578478 - 173992244
413767
ENSAPLT00000030538
173578478 - 173902833
324356
ENSAPLT00000014065
173578478 - 173902833
324356
ENSAPLT00000041352
173578478 - 173947310
368833