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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173803977_173899521_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
173803977 - 173899521
Intron Length:
95545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTTTC
5'SS Class:
strong_major
3'SS Sequence:
TGTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGAGAT
U12 Branch Point Sequence:
TCTTCCTGAGAT
Flanking Amino Acid:
LGRFSIDEETGVIYTADILD
Intron Amino Acid Position:
1099

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.4
1.02
0.7
87.4
21.4
Major BPS
51.7
0.04
1.3
50.1
44.2
Major PPT
89.4
0.89
0.7
85
29.8
Minor 5ss
39.3
-1.2
2.9
52
45.2
Minor BPS
58.6
0.35
1.8
78.48
43.3

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039744
173578478 - 173992244
413767
ENSAPLT00000030538
173578478 - 173902833
324356
ENSAPLT00000014065
173578478 - 173902833
324356
ENSAPLT00000041352
173578478 - 173947310
368833