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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_173902834_173947090_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
173902834 - 173947090
Intron Length:
44257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACTGGC
5'SS Class:
strong_major
3'SS Sequence:
CTCTCTGTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTGAT
U12 Branch Point Sequence:
TCTTGATTAACT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.7
0.72
1.1
70.6
41.4
Major BPS
83.8
0.84
1
73.6
41.8
Major PPT
76.6
0.6
0.8
71
33.3
Minor 5ss
38.6
-1.3
3.2
53
44.2
Minor BPS
64.6
0.54
2
84.99
41.5

Associated Gene:

Gene:
FAT3
Ensembl Gene ID:
ENSAPLG00000013451
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000041352
173578478 - 173947310
368833