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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174201155_174213328_R

Intron Information:

Intron Rank:
148548
Intron Class:
major
Intron Phase:
Intron Coordinates:
174201155 - 174213328
Intron Length:
12174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTGAGTATG
5'SS Class:
strong_major
3'SS Sequence:
TTCTAAATTACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTGTTCTAAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.2
0.74
1
79.9
34.9
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
77.3
0.61
0.9
70.1
39
Minor 5ss
36.3
-1.5
2.9
47
41.7
Minor BPS
68.1
0.65
1.6
82.85
39.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027329
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027179
174199521 - 174214234
14714