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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174234565_174242664_R

Intron Information:

Intron Rank:
152786
Intron Class:
major
Intron Phase:
Intron Coordinates:
174234565 - 174242664
Intron Length:
8100

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGGCTTT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.5
0.77
1
78.8
38.3
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
86.4
0.82
0.9
84.2
30.9
Minor 5ss
48.4
-0.1
3.2
72.7
44.5
Minor BPS
63.5
0.42
1.6
78.39
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035509
174234546 - 174249152
14607