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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174234565_174248750_R

Intron Information:

Intron Rank:
152791
Intron Class:
major
Intron Phase:
Intron Coordinates:
174234565 - 174248750
Intron Length:
14186

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCTGACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTCT
U12 Branch Point Sequence:
TTTTTTCTGACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.1
0.99
0.7
83.1
30.9
Major BPS
38.1
-0.7
4.3
71.7
44.6
Major PPT
86.4
0.82
0.9
84.2
30.9
Minor 5ss
29.6
-2.3
2.6
32.5
42.4
Minor BPS
63.5
0.42
1.6
78.39
31.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044633
174233712 - 174249152
15441