Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174240838_174242664_R

Intron Information:

Intron Rank:

152783

Intron Class:

major

Intron Phase:

Intron Coordinates:

174240838 - 174242664

Intron Length:

1827

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTAGGCTTT

5'SS Class:

strong_major

3'SS Sequence:

CTGTGTTCAATAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTCAC

U12 Branch Point Sequence:

ATATGCTAAACA

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

78.8

38.3

Major BPS

77.5

0.68

79.6

Major PPT

66.5

0.37

62.3

38.7

Minor 5ss

48.4

-0.1

3.2

72.7

44.5

Minor BPS

55.9

0.18

2.1

70.54

41.6

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000029762

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000022966

174240598 - 174252460

11863

ENSAPLT00000041496

174240598 - 174249152

8555