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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174248817_174252294_R

Intron Information:

Intron Rank:
152785
Intron Class:
major
Intron Phase:
Intron Coordinates:
174248817 - 174252294
Intron Length:
3478

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTTTA
5'SS Class:
strong_major
3'SS Sequence:
TCTTTCTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTAAA
U12 Branch Point Sequence:
TTAAAACTAAGC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88
0.9
0.8
86.9
22.7
Major BPS
70.2
0.5
1
71.6
30.1
Major PPT
92.4
0.95
0.6
88.1
21.7
Minor 5ss
45.5
-0.5
2.8
58.5
40.4
Minor BPS
40.9
-0.7
2.2
55.54
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000029762
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000022966
174240598 - 174252460
11863