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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174341136_174342018_F

Intron Information:

Intron Rank:
131873
Intron Class:
major
Intron Phase:
Intron Coordinates:
174341136 - 174342018
Intron Length:
883

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTGTC
5'SS Class:
strong_major
3'SS Sequence:
CTTTGTTTTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTGCAT
U12 Branch Point Sequence:
ATTGCATAGATG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97
1.11
0.7
88.7
23.8
Major BPS
66.2
0.4
1.4
77.4
37.3
Major PPT
88.9
0.88
0.7
84
31
Minor 5ss
37.2
-1.4
3.3
52
45.2
Minor BPS
44.7
-0.5
2
53.39
42

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020777
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043061
174340647 - 174342291
1645