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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174733244_174738679_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
174733244 - 174738679
Intron Length:
5436

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGAGAGAT
5'SS Class:
major
3'SS Sequence:
CATTTTCTTCTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
TATGCCTAAATA
Flanking Amino Acid:
QRFDPETNTEDSCTYHPGVP
Intron Amino Acid Position:
22

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.4
0.67
1
71.2
34.6
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
81.3
0.7
0.8
73.8
36.5
Minor 5ss
26.2
-2.7
3.3
29.9
43.1
Minor BPS
62.4
0.38
1.8
72.14
40.4

Associated Gene:

Gene:
CHORDC1
Ensembl Gene ID:
ENSAPLG00000000579
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001034
174733180 - 174747958
14779