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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174738730_174740705_F

Intron Information:

Intron Rank:
2
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
174738730 - 174740705
Intron Length:
1976

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTATG
5'SS Class:
strong_major
3'SS Sequence:
AAAATGTTCATAG|G
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTCAAAA
U12 Branch Point Sequence:
TTTTGTTCAAAA
Flanking Amino Acid:
GVPVFHDALKGWSCCKRRTT
Intron Amino Acid Position:
39

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
84.6
33.2
Major BPS
68.1
0.45
1
73.5
28.6
Major PPT
58.1
0.18
1
50.4
42.8
Minor 5ss
41.1
-1
2.8
51.8
38.9
Minor BPS
53.4
0.1
2
72.74
39.3

Associated Gene:

Gene:
CHORDC1
Ensembl Gene ID:
ENSAPLG00000000579
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001034
174733180 - 174747958
14779