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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174740763_174741231_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
174740763 - 174741231
Intron Length:
469

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCGTAATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATAAA
U12 Branch Point Sequence:
CTTTCCGTAATA
Flanking Amino Acid:
TDFSDFLSIVGCTKGHHNSE
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.1
0.76
0.9
78.9
34.5
Major BPS
69.8
0.49
1
70.3
31.8
Major PPT
70.1
0.45
0.9
66
34.6
Minor 5ss
44.6
-0.6
2.5
57.8
40.7
Minor BPS
66.5
0.51
2
78.78
38.5

Associated Gene:

Gene:
CHORDC1
Ensembl Gene ID:
ENSAPLG00000000579
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001034
174733180 - 174747958
14779