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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174742076_174742890_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
174742076 - 174742890
Intron Length:
815

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGGATA
5'SS Class:
strong_major
3'SS Sequence:
ATTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TTTTCTGTAATA
Flanking Amino Acid:
KLSSENEEKKEEESDEIKIG
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.7
1.01
0.8
87.8
27.9
Major BPS
75.8
0.64
1
65.8
41
Major PPT
89.4
0.89
0.7
84.7
29.3
Minor 5ss
35.8
-1.6
3.3
48.1
47.6
Minor BPS
68.2
0.57
2
82.68
32.7

Associated Gene:

Gene:
CHORDC1
Ensembl Gene ID:
ENSAPLG00000000579
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001034
174733180 - 174747958
14779