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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174742950_174744692_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
174742950 - 174744692
Intron Length:
1743

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTGGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTACCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ACTAAAT
U12 Branch Point Sequence:
TTTTTTTTACCA
Flanking Amino Acid:
TACKNAGCSKTYQGLHSTED
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
79
35.3
Major BPS
61
0.27
1.1
67.3
35.2
Major PPT
90.1
0.9
0.8
85.7
33.5
Minor 5ss
36.1
-1.6
3.3
49.5
41.2
Minor BPS
71.5
0.67
1.5
82.25
33.1

Associated Gene:

Gene:
CHORDC1
Ensembl Gene ID:
ENSAPLG00000000579
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000001034
174733180 - 174747958
14779