About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174898322_174899589_R

Intron Information:

Intron Rank:
19
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
174898322 - 174899589
Intron Length:
1268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCAA
5'SS Class:
strong_major
3'SS Sequence:
CCTTTCCCCACAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTTAC
U12 Branch Point Sequence:
TTTTACTTAGTA
Flanking Amino Acid:
PLGLPGRKFYRHVIFAPSSH
Intron Amino Acid Position:
695

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.92
0.9
74.9
37
Major BPS
86.6
0.91
0.8
77.7
36.7
Major PPT
78.4
0.64
0.7
72.4
25.9
Minor 5ss
30.1
-2.3
3.2
37.9
46.9
Minor BPS
67.4
0.54
1.7
80.54
35.2

Associated Gene:

Gene:
NAALAD2
Ensembl Gene ID:
ENSAPLG00000012368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012920
174897555 - 174932937
35383