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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174905183_174906542_R

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
174905183 - 174906542
Intron Length:
1360

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTACATGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTACAT
U12 Branch Point Sequence:
TCCTCTATGACA
Flanking Amino Acid:
DPAPENNSYPRINKLGSGSD
Intron Amino Acid Position:
518

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
96.5
1.1
0.7
87.9
29.3
Major BPS
70.2
0.5
1.1
77.2
36
Major PPT
75.8
0.58
0.9
71.4
33.6
Minor 5ss
41.9
-0.9
2.9
58.7
45.8
Minor BPS
57.6
0.23
1.6
66.8
40

Associated Gene:

Gene:
NAALAD2
Ensembl Gene ID:
ENSAPLG00000012368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012920
174897555 - 174932937
35383