About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174917103_174918593_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
174917103 - 174918593
Intron Length:
1491

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGCATC
5'SS Class:
strong_major
3'SS Sequence:
TGCTTGTTTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAA
U12 Branch Point Sequence:
TTTTAAGTAATT
Flanking Amino Acid:
IGVLRGAVEPDRYIIFGGHR
Intron Amino Acid Position:
376

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.4
0.88
0.8
81.3
32.8
Major BPS
87.3
0.93
0.8
78
36.5
Major PPT
81.1
0.7
0.9
72.5
42.4
Minor 5ss
38.5
-1.3
3
51.2
45.7
Minor BPS
50.9
0.11
2.4
82.17
39.2

Associated Gene:

Gene:
NAALAD2
Ensembl Gene ID:
ENSAPLG00000012368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012920
174897555 - 174932937
35383