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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174920894_174921168_R

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
174920894 - 174921168
Intron Length:
275

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGTATA
5'SS Class:
strong_major
3'SS Sequence:
TTTCACTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTTCACTTAACA
Flanking Amino Acid:
IGYHDAEVLLRSMGGPAAPD
Intron Amino Acid Position:
314

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.84
0.9
83.5
29.8
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
78.2
0.64
0.9
73.7
35.3
Minor 5ss
34.3
-1.8
2.8
43.1
43.9
Minor BPS
77.9
0.87
1.4
86.46
31.3

Associated Gene:

Gene:
NAALAD2
Ensembl Gene ID:
ENSAPLG00000012368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012920
174897555 - 174932937
35383