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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174924105_174924760_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
174924105 - 174924760
Intron Length:
656

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGGGTT
5'SS Class:
strong_major
3'SS Sequence:
AATAATTTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CTGCATTTAAAA
Flanking Amino Acid:
RYGKIFRGNKVKNAMLAGAQ
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.9
0.75
1
79.7
33.7
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
73.8
0.54
1
65.6
44.3
Minor 5ss
36.9
-1.5
3.8
55.6
43.2
Minor BPS
49.8
-0
1.6
58.87
40.7

Associated Gene:

Gene:
NAALAD2
Ensembl Gene ID:
ENSAPLG00000012368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012920
174897555 - 174932937
35383