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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174925848_174927146_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
174925848 - 174927146
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGATCTTT
5'SS Class:
major
3'SS Sequence:
TATTTATTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TGTTATTTATTT
Flanking Amino Acid:
ISVVDDQGNEIFNTSSFEPP
Intron Amino Acid Position:
145

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
76.8
34.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.7
0.74
0.8
77.6
35.4
Minor 5ss
44.4
-0.6
3.1
64.6
46.7
Minor BPS
58.5
0.34
1.8
77.47
39.3

Associated Gene:

Gene:
NAALAD2
Ensembl Gene ID:
ENSAPLG00000012368
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000012920
174897555 - 174932937
35383