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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174941224_174943238_R

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
174941224 - 174943238
Intron Length:
2015

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAA|GTAAGTTTT
5'SS Class:
strong_major
3'SS Sequence:
GTTTTGCTTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTAACAT
U12 Branch Point Sequence:
CTGTAGCTAACA
Flanking Amino Acid:
HDRLQHTDTNNLLAVRSLND
Intron Amino Acid Position:
658

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
90.7
21.1
Major BPS
58.7
0.22
1.2
67
38
Major PPT
80.3
0.68
0.8
77.9
36.6
Minor 5ss
47.8
-0.2
2.8
67.5
37.3
Minor BPS
44.6
-0.4
2.4
60.76
45

Associated Gene:

Gene:
FOLH1
Ensembl Gene ID:
ENSAPLG00000012440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013005
174939927 - 174964080
24154