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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_174943321_174944031_R

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
174943321 - 174944031
Intron Length:
711

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTACGTACA
5'SS Class:
major
3'SS Sequence:
TTTCTCCCACCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
TTAAAGTTAAAC
Flanking Amino Acid:
EQLATYNVSFDALFSAVKNF
Intron Amino Acid Position:
631

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1
73.5
37
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
78.1
0.63
0.8
71.5
34.3
Minor 5ss
35.1
-1.7
2.8
40.3
40.4
Minor BPS
46.6
-0.2
2.3
62.75
41.8

Associated Gene:

Gene:
FOLH1
Ensembl Gene ID:
ENSAPLG00000012440
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000013005
174939927 - 174964080
24154